Array Shifting + Deleting + counting

I am trying to get another array to work tonight. It is similar to my last issue, which is where it needs to shift, and delete any extras, but now i also need to count the total number of instances of a particular value...
If you run this and enter 1,1,1,-999 you will get 1,2,2,0,0,0 out and i cant for the life of my figure out why A) I am only getting a 2 count in a[1][1] and B) why i am getting a 2 in a[2][0]. Please help!

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#include <iostream>
using namespace std;
void enterArray(int a[][1], int size, int& numberUsed);
// Size is the max size of array a
//Number Used is number of values stored in a
//a[0] - a[numberUsed-1] are all char
void deleteRepeats(int a[][1], int numberUsed);
int main()
{
	const int max_char = 26;
	int sampleArray[max_char][1];
	int numberUsed;
	enterArray(sampleArray, max_char, numberUsed);
	deleteRepeats(sampleArray, numberUsed);
	for (int index = 0; index < numberUsed; index++)
		cout << sampleArray[index][0] << "\t" << sampleArray[index][1] << endl;
	cout << endl;
	return 0;
}


void enterArray(int a[][1], int size, int& numberUsed)
{
	cout << "Please enter up to " << size << " integers\n" << "End the statement with -999\n";
	int next;
	int index = 0;
	cin >> next;
	while ((next != -999) && (index < size))
	{
		a[index][0] = next;
		index++;
		cin >> next;
	}
	numberUsed = index;
	while(index >=0)
	{
		a[index][1] = 1;
		index--;
	}
	index = numberUsed;
}

void deleteRepeats(int a[][1], int numberUsed)
{
	int i = 0, j=0, k = 0, counter = 0;
	int length;
	length = numberUsed;
	for( int i = 0 ; i < length-1 ; i++)
		for( int j = i+1 ; j < length ; j++)
			if( a[i][0] == a[j][0] )
			{
				   //shift
				a[j][1] = a[j][1] + a[i][1];
               for( int k = j ; k < length-1 ; k++)
			   {        a[k][0] = a[k+1][0];
						a[k][1] = a[k+1][1];
			   }
               length--;
               j--;
			   a[length][0] = 0;
			   a[length][1] = 0;
			   
			}
}
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